Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6458

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14825 and 14826 are separated by 442 nucleotides14826 and 14827 are separated by 59 nucleotides mRNA_6457: 14825 - Hypothetical Protein, at 833,906 to 834,580 14825 mRNA_6458: 14826 - K01193 INV, sacA beta-fructofuranosidase, at 835,023 to 837,288 14826 mRNA_6459: 14827 - BLAST beta-fructofuranosidase [Cryptococcus gattii VGIV IND..., at 837,348 to 837,887 14827

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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834,134 + 14825 mRNA_6457 0.34 +0.4
834,448 + 14825 mRNA_6457 0.80 -0.4
834,545 - +1.6
834,548 + +0.9
834,944 + -2.6
835,141 - +0.2
835,148 + +0.5
835,378 - 14826 mRNA_6458 0.16 -0.9
836,044 + 14826 mRNA_6458 0.45 -0.3
836,067 + 14826 mRNA_6458 0.46 +0.9
836,286 + 14826 mRNA_6458 0.56 +0.9
836,317 - 14826 mRNA_6458 0.57 +0.5
836,347 + 14826 mRNA_6458 0.58 -0.0
836,770 + 14826 mRNA_6458 0.77 +0.8
836,867 - 14826 mRNA_6458 0.81 -0.8
836,873 + 14826 mRNA_6458 0.82 +0.5
836,928 - 14826 mRNA_6458 0.84 +0.2
837,670 + 14827 mRNA_6459 0.60 +0.3
837,915 - -0.3
837,966 - +1.4
838,077 + +1.5
838,152 - -0.4
838,193 + -0.7
838,265 + +0.3

Or see this region's nucleotide sequence