Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6463

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14831 and 14832 are separated by 169 nucleotides mRNA_6463: 14831 - K10427 DCTN5 dynactin 5, at 844,164 to 845,248 14831 mRNA_6464: 14832 - KOG1609 Protein involved in mRNA turnover and stability, at 845,418 to 846,912 14832

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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843,218 + +0.3
843,355 + +0.8
843,514 + +2.3
843,515 + -1.0
843,515 + +0.7
843,523 - +0.4
843,534 - -1.6
843,539 - +0.1
843,670 + +0.2
843,685 + +0.2
843,685 + +0.2
843,754 - +1.9
843,773 + -2.3
843,815 + +0.7
843,815 + +1.0
843,838 - -1.5
845,077 - 14831 mRNA_6463 0.84 +1.6
845,228 - +1.0
845,342 + +0.1
845,344 + +2.1
845,496 + -1.6
845,506 - +0.0
845,511 + -0.1
845,660 - 14832 mRNA_6464 0.16 +0.2
845,662 + 14832 mRNA_6464 0.16 +2.0
845,796 + 14832 mRNA_6464 0.25 +1.9
846,116 + 14832 mRNA_6464 0.47 +0.7
846,203 - 14832 mRNA_6464 0.53 +1.2

Or see this region's nucleotide sequence