Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6472

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14839 and 14840 are separated by 96 nucleotides14840 and 14841 are separated by 295 nucleotides mRNA_6471: 14839 - KOG0806 Carbon-nitrogen hydrolase, at 866,226 to 867,912 14839 mRNA_6472: 14840 - Hypothetical Protein, at 868,009 to 868,986 14840 mRNA_6473: 14841 - HMMPfam-XPG domain containing-PF12813,SUPERFAMILY--SSF88723, at 869,282 to 871,336 14841

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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867,029 - 14839 mRNA_6471 0.48 -1.3
867,626 - 14839 mRNA_6471 0.83 +0.6
867,637 + 14839 mRNA_6471 0.84 +1.2
867,693 + 14839 mRNA_6471 0.87 +0.2
868,035 + +1.7
868,248 - 14840 mRNA_6472 0.24 +0.4
868,387 - 14840 mRNA_6472 0.39 -0.6
868,461 + 14840 mRNA_6472 0.46 +0.0
868,470 - 14840 mRNA_6472 0.47 -0.3
868,794 - 14840 mRNA_6472 0.80 -0.8
868,894 - +0.7
869,057 - +1.6
869,074 + -0.1
869,086 - -0.3
869,215 - +0.1
869,382 + +0.0
869,831 - 14841 mRNA_6473 0.27 +1.0
869,941 - 14841 mRNA_6473 0.32 +0.9

Or see this region's nucleotide sequence