Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6482

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14849 and 14850 are separated by 192 nucleotides14850 and 14851 are separated by 656 nucleotides mRNA_6481: 14849 - K02201 E2.7.7.3B pantetheine-phosphate adenylyltransferase, at 892,037 to 893,331 14849 mRNA_6482: 14850 - Hypothetical Protein, at 893,524 to 894,299 14850 mRNA_6483: 14851 - Hypothetical Protein, at 894,956 to 895,414 14851

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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893,995 - 14850 mRNA_6482 0.61 +1.2
894,039 - 14850 mRNA_6482 0.66 +0.5
894,176 + 14850 mRNA_6482 0.84 +1.2
894,306 + +0.7
894,311 - +0.2
894,375 - +0.8
894,392 - -0.5
894,431 - -0.1
894,460 - +0.6
894,465 + +0.1
894,480 + +0.2
894,514 + -0.7
894,561 - +0.0
894,596 + -0.2
894,755 + -0.2
894,768 - +1.7
894,788 + +0.4
894,802 + -0.7
895,140 - 14851 mRNA_6483 0.40 +0.0
895,283 - 14851 mRNA_6483 0.71 -0.6

Or see this region's nucleotide sequence