Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6485

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14853 and 14854 are separated by 499 nucleotides mRNA_6485: 14853 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 898,441 to 899,753 14853 mRNA_6486: 14854 - K08294 MKK1_2 mitogen-activated protein kinase kinase, at 900,253 to 901,810 14854

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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897,606 + +1.7
897,698 + +0.3
897,956 + -0.8
898,050 + -0.1
898,079 - -0.4
898,107 + +0.3
898,139 - -0.9
898,139 + -0.2
898,153 + -0.0
898,153 + -1.9
898,208 + +0.9
898,261 - -0.1
898,288 - +0.5
898,550 + -0.3
898,562 + +1.0
898,841 - 14853 mRNA_6485 0.30 +0.3
899,044 - 14853 mRNA_6485 0.46 +1.2
899,124 - 14853 mRNA_6485 0.52 +1.9
899,270 - 14853 mRNA_6485 0.63 +0.8
899,426 - 14853 mRNA_6485 0.75 +0.4
899,852 - +0.9
899,875 + -0.1
899,900 - -1.0
899,902 - -0.5
900,013 - -1.0
900,039 - +0.4
900,194 - -0.4
900,200 + -0.4
900,213 - -0.3
900,320 + +0.7
900,480 - 14854 mRNA_6486 0.15 +0.5

Or see this region's nucleotide sequence