Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6507

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14874 and 14875 are separated by 333 nucleotides14875 and 14876 are separated by 226 nucleotides mRNA_6506: 14874 - KOG2712 Transcriptional coactivator, at 945,266 to 946,046 14874 mRNA_6507: 14875 - K09503 DNAJA2 DnaJ homolog subfamily A member 2, at 946,380 to 948,172 14875 mRNA_6508: 14876 - KOG2688 Transcription-associated recombination protein - Thp1p, at 948,399 to 950,118 14876

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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945,569 + 14874 mRNA_6506 0.39 -0.2
945,630 + 14874 mRNA_6506 0.47 +1.1
945,790 - 14874 mRNA_6506 0.67 +2.1
945,818 + 14874 mRNA_6506 0.71 +0.4
946,106 + +1.8
946,106 + +1.0
946,231 + -1.7
946,238 - -0.9
946,255 + -0.1
946,262 + +1.4

Or see this region's nucleotide sequence