Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6567

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14934 and 14935 are separated by 283 nucleotides14935 and 14936 are separated by 458 nucleotides mRNA_6566: 14934 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 1,112,309 to 1,113,884 14934 mRNA_6567: 14935 - KOG2662 Magnesium transporters CorA family, at 1,114,168 to 1,116,354 14935 mRNA_6568: 14936 - BLAST Protein IWS1 homolog A [Rhizoctonia solani], at 1,116,813 to 1,120,702 14936

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,113,213 + 14934 mRNA_6566 0.57 +0.6
1,113,294 - 14934 mRNA_6566 0.62 +0.6
1,113,786 - -1.2
1,113,797 - +0.2
1,113,931 - -0.0
1,113,931 - -1.8
1,113,932 + +2.1
1,113,932 - +0.1
1,113,944 + +0.0
1,113,949 + +1.6
1,113,950 + +0.5
1,113,958 + -1.2
1,113,958 - +0.3
1,113,958 - +1.2
1,113,968 - +1.0
1,114,000 - +0.7
1,114,023 + -0.9
1,114,087 + -0.8
1,114,116 - -0.3
1,114,118 - +1.6
1,114,143 + -0.5
1,114,354 - -0.4
1,114,360 + +0.5
1,114,700 - 14935 mRNA_6567 0.24 +0.0
1,114,710 + 14935 mRNA_6567 0.25 +2.0
1,115,013 - 14935 mRNA_6567 0.39 -0.1
1,115,013 - 14935 mRNA_6567 0.39 -0.5
1,115,013 + 14935 mRNA_6567 0.39 -0.9
1,115,024 - 14935 mRNA_6567 0.39 -1.3
1,115,692 - 14935 mRNA_6567 0.70 -0.1
1,115,881 + 14935 mRNA_6567 0.78 +0.3
1,116,121 - 14935 mRNA_6567 0.89 +0.5
1,116,152 + +0.0
1,116,153 + -0.6
1,116,286 - +2.1
1,116,291 + +1.2
1,116,299 - +0.4
1,116,438 - -2.4
1,116,441 - +0.5
1,116,750 + +1.1
1,116,755 - -0.7
1,116,775 - +0.4

Or see this region's nucleotide sequence