Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6589

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14956 and 14957 are separated by 441 nucleotides14957 and 14958 are separated by 456 nucleotides mRNA_6588: 14956 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 1,167,878 to 1,169,516 14956 mRNA_6589: 14957 - K12386 CTNS cystinosin, at 1,169,958 to 1,171,396 14957 mRNA_6590: 14958 - K03009 RPB12, POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4, at 1,171,853 to 1,172,203 14958

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,169,594 + +1.2
1,169,597 + +1.0
1,169,601 + +0.4
1,169,603 - +2.6
1,169,608 + +0.8
1,169,705 - +1.9
1,169,732 - +0.1
1,169,733 - +1.3
1,169,734 + +0.7
1,169,736 - +0.4
1,169,772 + +1.4
1,169,856 - -0.4
1,169,880 + +1.0
1,169,893 - +0.3
1,169,895 + +1.7
1,169,895 + -0.3
1,169,895 - +0.1
1,169,895 + -0.5
1,169,905 + +0.9
1,169,910 + +1.8
1,169,928 - +0.4
1,169,928 - -0.4
1,169,929 + +0.3
1,169,934 - +0.4
1,169,942 + -0.2
1,169,955 - +0.8
1,169,959 - -0.4
1,169,983 + -0.2
1,169,985 - -0.1
1,169,987 + -1.5
1,169,989 + +0.1
1,169,993 + -1.1
1,169,993 - +1.3
1,169,995 + +0.2
1,169,997 - -0.1
1,169,997 + -0.2
1,170,003 + +1.5
1,170,003 - +1.1
1,170,005 - +1.3
1,170,012 + +0.3
1,170,015 - +0.0
1,170,163 + 14957 mRNA_6589 0.14 +1.0
1,170,164 - 14957 mRNA_6589 0.14 +1.0
1,170,166 - 14957 mRNA_6589 0.14 -1.0
1,170,295 - 14957 mRNA_6589 0.23 +0.2
1,170,472 + 14957 mRNA_6589 0.36 +0.4
1,170,473 + 14957 mRNA_6589 0.36 +0.2
1,170,476 + 14957 mRNA_6589 0.36 +0.4
1,170,612 - 14957 mRNA_6589 0.45 +0.2
1,170,889 + 14957 mRNA_6589 0.65 +0.8
1,171,027 - 14957 mRNA_6589 0.74 +1.0
1,171,056 + 14957 mRNA_6589 0.76 +1.5
1,171,201 - 14957 mRNA_6589 0.86 -0.2
1,171,326 - -0.5
1,171,340 - +0.6
1,171,356 - +2.0
1,171,475 + -1.0
1,171,486 - +1.3
1,171,637 - +0.5
1,172,116 + 14958 mRNA_6590 0.75 -0.2

Or see this region's nucleotide sequence