Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6603

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14970 and 14971 are separated by 416 nucleotides14971 and 14972 are separated by 214 nucleotides mRNA_6602: 14970 - K07953 SAR1 GTP-binding protein SAR1, at 1,206,815 to 1,208,411 14970 mRNA_6603: 14971 - K02149 ATPeV1D, ATP6M V-type H+-transporting ATPase subunit D, at 1,208,828 to 1,210,295 14971 mRNA_6604: 14972 - K12812 UAP56, BAT1, SUB2 ATP-dependent RNA helicase UAP56/SUB2, at 1,210,510 to 1,213,080 14972

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,208,600 - +0.5
1,208,637 + +1.8
1,208,638 + +0.4
1,208,645 + -0.3
1,208,781 - +2.4

Or see this region's nucleotide sequence