Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6616

Experiment: YNB Methylricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14983 and 14984 are separated by 320 nucleotides14984 and 14985 are separated by 239 nucleotides mRNA_6615: 14983 - Hypothetical Protein, at 1,254,532 to 1,256,049 14983 mRNA_6616: 14984 - Hypothetical Protein, at 1,256,370 to 1,257,792 14984 mRNA_6617: 14985 - K15544 SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72, at 1,258,032 to 1,259,206 14985

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
remove
1,255,435 - 14983 mRNA_6615 0.59 +0.6
1,255,833 + 14983 mRNA_6615 0.86 +0.3
1,255,987 - -0.4
1,255,987 - -1.6
1,255,988 + +0.2
1,256,018 - +2.2
1,256,170 - -0.2
1,256,177 + -0.3
1,256,186 + -0.6
1,256,191 + +0.0
1,256,347 - +0.5
1,256,354 + -0.3
1,256,622 - 14984 mRNA_6616 0.18 -0.7
1,256,677 + 14984 mRNA_6616 0.22 -2.1
1,256,793 - 14984 mRNA_6616 0.30 +1.3
1,257,230 - 14984 mRNA_6616 0.60 +0.7
1,257,514 + 14984 mRNA_6616 0.80 -0.5
1,257,524 + 14984 mRNA_6616 0.81 -0.6
1,257,806 + +0.0
1,257,958 - +1.6
1,257,974 + +0.8
1,257,977 + -0.2
1,258,114 + +1.8
1,258,213 - 14985 mRNA_6617 0.15 +0.2
1,258,640 - 14985 mRNA_6617 0.52 +0.3

Or see this region's nucleotide sequence