Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6678

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15045 and 15046 are separated by 392 nucleotides15046 and 15047 are separated by 240 nucleotides mRNA_6677: 15045 - Hypothetical Protein, at 1,421,176 to 1,421,967 15045 mRNA_6678: 15046 - KOG2533 Permease of the major facilitator superfamily, at 1,422,360 to 1,424,349 15046 mRNA_6679: 15047 - K05389 KCNKF potassium channel subfamily K, other eukaryote, at 1,424,590 to 1,427,114 15047

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,421,601 + 15045 mRNA_6677 0.54 -1.2
1,421,820 + 15045 mRNA_6677 0.81 +0.4
1,422,164 - -0.5
1,422,287 + +0.8
1,422,749 - 15046 mRNA_6678 0.20 -0.3
1,422,762 + 15046 mRNA_6678 0.20 -0.8
1,424,036 + 15046 mRNA_6678 0.84 +0.1
1,424,048 - 15046 mRNA_6678 0.85 -2.5
1,424,801 - +0.1
1,424,914 - 15047 mRNA_6679 0.13 -0.4
1,425,103 - 15047 mRNA_6679 0.20 -0.3
1,425,234 + 15047 mRNA_6679 0.26 +0.3

Or see this region's nucleotide sequence