Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6733

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15101 and 15102 are separated by 133 nucleotides mRNA_6733: 15101 - KOG4412 26S proteasome regulatory complex, subunit PSMD10, at 20,964 to 21,791 15101 mRNA_6734: 15102 - Hypothetical Protein, at 21,925 to 24,629 15102

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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19,984 + -1.0
19,992 + +0.1
20,004 - +1.8
20,137 - +0.9
20,171 + +0.2
20,288 + -1.2
20,457 - +2.7
20,539 + +0.1
20,571 + +1.8
20,585 - +0.5
20,586 + -1.4
20,597 - +0.0
20,604 + +0.9
20,604 + -0.2
20,632 + +1.4
20,723 - +0.6
20,735 - -0.6
20,766 + +0.3
20,777 - -1.3
20,786 + +1.7
20,922 + -0.6
21,068 - 15101 mRNA_6733 0.13 +0.1
21,083 + 15101 mRNA_6733 0.14 +1.1
21,112 + 15101 mRNA_6733 0.18 -0.8
21,192 + 15101 mRNA_6733 0.28 +0.7
21,204 - 15101 mRNA_6733 0.29 -1.1
21,226 + 15101 mRNA_6733 0.32 -0.1
21,348 - 15101 mRNA_6733 0.46 +0.8
21,502 - 15101 mRNA_6733 0.65 +0.9
21,506 - 15101 mRNA_6733 0.65 +1.0
21,934 + +0.8
22,070 + +0.4
22,246 - 15102 mRNA_6734 0.12 +0.8
22,246 + 15102 mRNA_6734 0.12 -0.3
22,363 - 15102 mRNA_6734 0.16 +0.9
22,588 + 15102 mRNA_6734 0.25 -0.5
22,729 + 15102 mRNA_6734 0.30 +0.5

Or see this region's nucleotide sequence