Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6736

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15103 and 15104 are separated by 166 nucleotides15104 and 15105 are separated by 719 nucleotides mRNA_6735: 15103 - Hypothetical Protein, at 24,942 to 26,366 15103 mRNA_6736: 15104 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 26,533 to 28,608 15104 mRNA_6737: 15105 - KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins, at 29,328 to 32,887 15105

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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25,636 + 15103 mRNA_6735 0.49 +0.9
25,745 - 15103 mRNA_6735 0.56 +0.7
25,750 + 15103 mRNA_6735 0.57 -1.3
25,864 + 15103 mRNA_6735 0.65 +0.3
25,871 - 15103 mRNA_6735 0.65 +0.9
25,912 + 15103 mRNA_6735 0.68 +0.0
26,056 + 15103 mRNA_6735 0.78 -0.4
26,301 + +1.0
26,330 + +0.4
26,504 + +2.1
26,531 + +0.7
26,534 - -0.9
26,588 - +0.0
26,629 + -0.3
26,646 + +0.4
26,751 - 15104 mRNA_6736 0.11 -0.7
26,781 - 15104 mRNA_6736 0.12 -1.0
26,927 - 15104 mRNA_6736 0.19 +1.5
27,128 + 15104 mRNA_6736 0.29 -0.0
27,389 + 15104 mRNA_6736 0.41 +1.4
27,464 - 15104 mRNA_6736 0.45 -0.6
27,485 + 15104 mRNA_6736 0.46 -0.3
27,506 + 15104 mRNA_6736 0.47 +0.4
27,607 - 15104 mRNA_6736 0.52 -1.3
27,825 + 15104 mRNA_6736 0.62 +0.6
28,048 - 15104 mRNA_6736 0.73 +0.3
28,082 - 15104 mRNA_6736 0.75 +1.2
28,088 + 15104 mRNA_6736 0.75 +1.1
28,088 + 15104 mRNA_6736 0.75 +0.1
28,123 - 15104 mRNA_6736 0.77 +0.6
28,234 + 15104 mRNA_6736 0.82 -0.3
28,265 + 15104 mRNA_6736 0.83 +1.4
28,374 - 15104 mRNA_6736 0.89 +0.5
28,500 - -0.1
28,653 - -0.0
28,712 - -0.5
28,946 + +2.0
28,970 + +0.5
28,990 + +0.9
29,115 - -0.9
29,121 - +0.7
29,124 + +0.6
29,269 + +0.7
29,399 - +0.0
29,449 + +0.5
29,540 - +0.0
29,550 - -0.3
29,585 - +0.1
29,606 + -1.5

Or see this region's nucleotide sequence