Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6746

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15113 and 15114 are separated by 117 nucleotides15114 and 15115 are separated by 146 nucleotides mRNA_6745: 15113 - HMMPfam-Uncharacterised conserved protein (DUF2315)-PF10231, at 48,420 to 49,672 15113 mRNA_6746: 15114 - KOG3381 Uncharacterized conserved protein, at 49,790 to 50,693 15114 mRNA_6747: 15115 - Hypothetical Protein, at 50,840 to 52,306 15115

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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49,686 - +0.6
50,749 + +0.1
50,764 + +0.9
50,805 + +0.3
50,805 - +0.9
50,858 - +0.3
50,893 - -0.4
50,934 + -1.0
51,163 + 15115 mRNA_6747 0.22 +1.2
51,181 + 15115 mRNA_6747 0.23 -0.9
51,181 + 15115 mRNA_6747 0.23 +0.7
51,283 - 15115 mRNA_6747 0.30 -0.6
51,283 + 15115 mRNA_6747 0.30 +0.8
51,353 + 15115 mRNA_6747 0.35 +1.2
51,620 + 15115 mRNA_6747 0.53 +0.1

Or see this region's nucleotide sequence