Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6750

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15117 and 15118 are separated by 238 nucleotides15118 and 15119 are separated by 77 nucleotides mRNA_6749: 15117 - Hypothetical Protein, at 54,204 to 55,988 15117 mRNA_6750: 15118 - SUPERFAMILY--SSF47473, at 56,227 to 57,172 15118 mRNA_6751: 15119 - K10578 UBE2J1, NCUBE1, UBC6 ubiquitin-conjugating enzyme E2 J1, at 57,250 to 58,945 15119

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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55,248 - 15117 mRNA_6749 0.58 -0.4
55,265 + 15117 mRNA_6749 0.59 -0.4
55,366 + 15117 mRNA_6749 0.65 -0.7
55,377 + 15117 mRNA_6749 0.66 +1.4
55,411 - 15117 mRNA_6749 0.68 -0.9
55,418 + 15117 mRNA_6749 0.68 -0.1
55,684 + 15117 mRNA_6749 0.83 +0.9
55,702 + 15117 mRNA_6749 0.84 +0.0
55,734 - 15117 mRNA_6749 0.86 +0.5
55,741 - 15117 mRNA_6749 0.86 -2.2
55,797 + 15117 mRNA_6749 0.89 -0.2
55,847 + -0.5
55,883 + +0.4
55,973 - +1.5
55,979 - +0.9
55,988 - -0.0
55,988 - -0.3
55,993 + +0.0
56,081 + +0.7
56,130 - +0.4
56,133 + +0.4
56,135 - -1.5
56,257 - +0.6
56,312 + +0.3
56,430 + 15118 mRNA_6750 0.21 -0.0
56,442 + 15118 mRNA_6750 0.23 -0.2
56,445 - 15118 mRNA_6750 0.23 +0.1
56,570 - 15118 mRNA_6750 0.36 +1.5
56,576 - 15118 mRNA_6750 0.37 -0.0
56,586 + 15118 mRNA_6750 0.38 +1.3
56,588 + 15118 mRNA_6750 0.38 -1.3
56,589 + 15118 mRNA_6750 0.38 +0.5
56,606 + 15118 mRNA_6750 0.40 -1.6
56,627 + 15118 mRNA_6750 0.42 +0.1
56,713 - 15118 mRNA_6750 0.51 +0.1
57,300 + -0.2
57,303 + +0.2
57,312 - +0.3
57,596 - 15119 mRNA_6751 0.20 +0.2
57,605 + 15119 mRNA_6751 0.21 -0.5
57,613 - 15119 mRNA_6751 0.21 +0.4
57,617 + 15119 mRNA_6751 0.22 +0.3
57,760 - 15119 mRNA_6751 0.30 +0.5
57,763 + 15119 mRNA_6751 0.30 +0.0
57,763 + 15119 mRNA_6751 0.30 +0.9
57,767 - 15119 mRNA_6751 0.30 +0.3
57,896 - 15119 mRNA_6751 0.38 -0.3

Or see this region's nucleotide sequence