Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6765

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15132 and 15133 are separated by 181 nucleotides15133 and 15134 are separated by 125 nucleotides mRNA_6764: 15132 - K12273 SEC66 translocation protein SEC66, at 85,299 to 86,536 15132 mRNA_6765: 15133 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 86,718 to 88,049 15133 mRNA_6766: 15134 - HMMPfam-PIG-X / PBN1-PF08320,SMART-PIG-X / PBN1-SM00780, at 88,175 to 88,997 15134

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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86,418 + -0.8
86,553 + +0.7
86,554 - -1.9
86,686 + -0.4
86,687 - -1.7
86,690 - +0.4
86,695 + +0.6
86,709 + +0.9
86,853 - 15133 mRNA_6765 0.10 -0.6
86,979 + 15133 mRNA_6765 0.20 -0.3
86,988 - 15133 mRNA_6765 0.20 +1.5
86,991 + 15133 mRNA_6765 0.20 -1.1
86,993 - 15133 mRNA_6765 0.21 -0.1
87,122 - 15133 mRNA_6765 0.30 +2.8
87,316 - 15133 mRNA_6765 0.45 -0.0
87,551 - 15133 mRNA_6765 0.63 -1.0
87,708 + 15133 mRNA_6765 0.74 +0.7
88,136 - -0.7
88,151 + -0.6
88,168 + -0.9

Or see this region's nucleotide sequence