Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6806

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15173 and 15174 are separated by 655 nucleotides15174 and 15175 are separated by 423 nucleotides mRNA_6805: 15173 - Hypothetical Protein, at 174,992 to 176,183 15173 mRNA_6806: 15174 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 176,839 to 177,908 15174 mRNA_6807: 15175 - HMMPfam-GRIP domain-PF01465,ProSiteProfiles-GRIP domain profile.-PS50913,SMART-golgin-97, RanBP2alpha,Imh1p and p230/golgin-245-SM00755, at 178,332 to 182,273 15175

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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175,841 + 15173 mRNA_6805 0.71 +0.1
176,378 + -0.0
176,383 + +0.1
176,413 + -2.5
176,416 - -1.9
177,781 + 15174 mRNA_6806 0.88 +2.3
177,957 + +1.9
178,128 - +0.8
178,149 + +0.5
178,588 - +0.2
178,699 - +0.2
178,861 + 15175 mRNA_6807 0.13 +0.3

Or see this region's nucleotide sequence