Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6822

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15189 and 15190 are separated by 325 nucleotides15190 and 15191 are separated by 40 nucleotides15191 and 15192 are separated by 302 nucleotides mRNA_6821: 15189 - K07739 ELP3, KAT9 elongator complex protein 3, at 209,677 to 212,045 15189 mRNA_6822: 15190 - K20303 TRAPPC4, TRS23 trafficking protein particle complex subunit 4, at 212,371 to 212,952 15190 mRNA_6823: 15191 - BLAST TNFR/NGFR cysteine-rich region family protein [Rh..., at 212,993 to 213,573 15191 mRNA_6824: 15192 - K03061 PSMC2, RPT1 26S proteasome regulatory subunit T1, at 213,876 to 215,865 15192

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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211,420 + 15189 mRNA_6821 0.74 +0.8
211,490 - 15189 mRNA_6821 0.77 -1.8
211,623 + 15189 mRNA_6821 0.82 -0.2
212,365 - +0.6
213,241 + 15191 mRNA_6823 0.43 +0.1

Or see this region's nucleotide sequence