Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6858

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15225 and 15226 are separated by 934 nucleotides15226 and 15227 are separated by 953 nucleotides mRNA_6857: 15225 - Hypothetical Protein, at 292,496 to 294,098 15225 mRNA_6858: 15226 - SUPERFAMILY--SSF103473, at 295,033 to 296,248 15226 mRNA_6859: 15227 - K16794 PAFAH1B1, LIS1 platelet-activating factor acetylhydrolase IB subunit alpha, at 297,202 to 298,993 15227

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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294,097 - -0.4
294,166 + +0.8
294,374 + -0.3
294,742 + +1.6
294,850 + +0.0
294,888 - -0.2
294,894 + -0.4
294,919 + +0.1
295,088 + -0.1
295,120 - -0.1
295,267 - 15226 mRNA_6858 0.19 +0.5
295,299 + 15226 mRNA_6858 0.22 -1.0
295,403 - 15226 mRNA_6858 0.30 +0.2
295,556 - 15226 mRNA_6858 0.43 +1.8
295,588 + 15226 mRNA_6858 0.46 +2.4
296,427 - -0.8
296,428 - -0.4
296,432 + +0.1
296,561 - -1.4
296,687 - +1.0
296,829 - -0.2
296,855 - +0.4
296,870 - -0.8
296,881 - +0.0
296,889 - -0.5
296,889 + +0.9
296,889 + -0.1
296,891 - -0.5
296,898 + +1.8
297,034 - +1.4

Or see this region's nucleotide sequence