Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6922

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15289 and 15290 are separated by 120 nucleotides15290 and 15291 are separated by 872 nucleotides mRNA_6921: 15289 - Hypothetical Protein, at 435,209 to 436,044 15289 mRNA_6922: 15290 - KOG4121 Nuclear pore complex, Nup133 component (sc Nup133), at 436,165 to 438,557 15290 mRNA_6923: 15291 - Hypothetical Protein, at 439,430 to 443,984 15291

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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435,277 + +1.4
435,296 + 15289 mRNA_6921 0.10 -0.4
435,316 - 15289 mRNA_6921 0.13 +0.8
435,333 - 15289 mRNA_6921 0.15 +0.1
435,370 - 15289 mRNA_6921 0.19 +0.3
435,527 + 15289 mRNA_6921 0.38 +0.9
435,567 - 15289 mRNA_6921 0.43 -2.4
435,568 - 15289 mRNA_6921 0.43 -0.4
435,733 + 15289 mRNA_6921 0.63 +0.7
435,756 + 15289 mRNA_6921 0.65 +0.8
435,847 + 15289 mRNA_6921 0.76 -0.3
435,853 + 15289 mRNA_6921 0.77 +0.7
435,876 + 15289 mRNA_6921 0.80 -1.1
435,884 - 15289 mRNA_6921 0.81 -0.3
435,886 + 15289 mRNA_6921 0.81 -0.9
435,953 - 15289 mRNA_6921 0.89 +0.2
435,997 + -0.3
436,033 + -0.4
436,041 - -0.2
436,041 + +0.7
436,069 + -0.1
436,072 - +0.1
436,091 - -2.4
436,094 + +0.3
436,114 + +0.5
436,180 + -1.2
436,320 - -0.6
436,472 + 15290 mRNA_6922 0.13 -0.6
437,472 + 15290 mRNA_6922 0.55 +0.0
437,527 + 15290 mRNA_6922 0.57 -0.7
437,622 + 15290 mRNA_6922 0.61 +0.4
437,623 + 15290 mRNA_6922 0.61 +1.3
437,628 + 15290 mRNA_6922 0.61 -0.8
438,194 - 15290 mRNA_6922 0.85 +1.4
438,341 - +0.5
438,627 - -0.3
438,782 - -1.0
438,813 + -0.1
439,209 + +0.3
439,432 - -0.5

Or see this region's nucleotide sequence