Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6947

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15314 and 15315 are separated by 636 nucleotides mRNA_6946: 15314 - K04713 SUR2 sphinganine C4-monooxygenase, at 499,195 to 500,447 15314 mRNA_6947: 15315 - K02555 MIH1 M-phase inducer tyrosine phosphatase, at 501,084 to 504,114 15315

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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500,551 + +0.7
500,570 + +0.2
500,666 + -1.9
500,685 - -0.7
500,695 + -1.3
500,700 + +0.2
500,711 - +1.2
500,736 + -1.1
500,802 + -0.9
500,868 - +0.5
500,893 + +1.9
500,963 + +0.1
500,993 + +0.4
500,998 + +0.4
501,087 + +1.9
501,131 + -0.2
501,237 + +0.2
501,338 + -0.7
501,338 + -2.3
501,338 + -0.5
501,467 + 15315 mRNA_6947 0.13 -0.0
503,884 + -2.2
504,343 - -0.5
504,348 + +0.5
504,423 + +1.1
504,482 + +2.4
504,483 + +0.6
504,486 - +0.7
504,486 - -1.0
504,582 + -0.3
504,630 + -0.0
504,698 - -1.7
504,772 + -0.7
504,775 + -0.2
504,798 + +1.0
504,799 + -0.4
504,799 + +0.9
504,799 + -1.2
504,906 - -0.3
505,082 - +1.7
505,086 + +1.6
505,087 - +2.4
505,097 - -0.1
505,103 + -0.3

Or see this region's nucleotide sequence