Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6966

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15333 and 15334 are separated by 359 nucleotides15334 and 15335 are separated by 251 nucleotides mRNA_6965: 15333 - Hypothetical Protein, at 553,877 to 555,010 15333 mRNA_6966: 15334 - K02210 MCM7, CDC47 DNA replication licensing factor MCM7, at 555,370 to 558,100 15334 mRNA_6967: 15335 - K19995 SCAMP secretory carrier-associated membrane protein, at 558,352 to 560,106 15335

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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554,394 - 15333 mRNA_6965 0.46 +0.7
554,406 - 15333 mRNA_6965 0.47 +0.4
554,768 + 15333 mRNA_6965 0.79 +0.3
554,772 + 15333 mRNA_6965 0.79 -2.3
554,956 + +0.2
555,105 + +0.6
555,129 + -0.5
555,129 + -0.1
555,132 - +0.7
555,145 + -0.5
555,158 - +0.1
555,287 - +0.2
555,303 + +0.4
558,137 - -0.3
558,509 + -0.5
559,097 - 15335 mRNA_6967 0.42 -0.3

Or see this region's nucleotide sequence