Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6988

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15355 and 15356 are separated by 334 nucleotides15356 and 15357 are separated by 70 nucleotides mRNA_6987: 15355 - BLAST plasma membrane protein [Pseudozyma hubeiensis SY62], at 606,395 to 609,554 15355 mRNA_6988: 15356 - K00485 FMO dimethylaniline monooxygenase (N-oxide forming), at 609,889 to 611,754 15356 mRNA_6989: 15357 - K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13, at 611,825 to 615,054 15357

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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609,018 + 15355 mRNA_6987 0.83 +0.5
609,037 + 15355 mRNA_6987 0.84 -1.0
609,134 + 15355 mRNA_6987 0.87 +0.5
609,168 - 15355 mRNA_6987 0.88 +0.4
609,432 + -1.4
609,450 - -0.4
609,482 + +1.1
609,514 + +0.4
609,752 + +1.9
609,761 - -1.9
609,766 - +0.9
609,774 + -0.1
609,775 - +2.3
609,780 + -0.5
609,780 + -0.4
609,795 - -0.2
609,796 - +1.0
609,800 + +1.1
609,805 - +0.8
609,809 + +1.2
609,813 - -0.4
609,816 + +0.2
609,817 - -0.0
609,994 + -0.0
609,997 + -0.4
610,282 - 15356 mRNA_6988 0.21 -1.3
610,520 + 15356 mRNA_6988 0.34 -0.7
610,569 - 15356 mRNA_6988 0.36 +0.2
610,863 + 15356 mRNA_6988 0.52 -0.9
610,886 + 15356 mRNA_6988 0.53 +1.0
611,440 - 15356 mRNA_6988 0.83 -1.0
611,583 + +0.2
611,759 - +0.4
612,011 - +0.8
612,030 - -0.4
612,034 + -1.2
612,644 - 15357 mRNA_6989 0.25 -2.3

Or see this region's nucleotide sequence