Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7005

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15372 and 15373 are separated by 211 nucleotides15373 and 15374 are separated by 268 nucleotides mRNA_7004: 15372 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,ProSitePatterns-Glycosyl hydrolases family 5 signature.-PS00659,SUPERFAMILY--SSF51445, at 650,077 to 652,863 15372 mRNA_7005: 15373 - SUPERFAMILY--SSF81383, at 653,075 to 653,981 15373 mRNA_7006: 15374 - K17974 JSN1, PUF1 protein JSN1, at 654,250 to 659,147 15374

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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652,395 - 15372 mRNA_7004 0.83 +1.3
652,562 + 15372 mRNA_7004 0.89 +0.0
652,819 - -0.1
652,835 - -1.4
652,838 - -0.2
652,855 + +1.8
652,992 - -0.1
653,150 + +0.0
653,269 - 15373 mRNA_7005 0.21 +0.4
653,270 - 15373 mRNA_7005 0.21 -0.4
653,274 - 15373 mRNA_7005 0.22 +2.3
653,278 + 15373 mRNA_7005 0.22 -2.5
653,286 + 15373 mRNA_7005 0.23 +0.5
653,288 - 15373 mRNA_7005 0.23 +2.4
653,294 + 15373 mRNA_7005 0.24 +2.0
653,410 - 15373 mRNA_7005 0.37 +1.5
653,864 - 15373 mRNA_7005 0.87 -0.5
653,977 + +2.1
654,148 - -1.8
654,166 - +0.6
654,255 - -0.8
654,322 + +0.7
654,410 + -0.3
654,598 - +0.3
654,598 + +0.2

Or see this region's nucleotide sequence