Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7039

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15406 and 15407 are separated by 350 nucleotides mRNA_7038: 15406 - K15458 SAP185_190 SIT4-associating protein SAP185/190, at 725,352 to 729,605 15406 mRNA_7039: 15407 - Hypothetical Protein, at 729,956 to 731,972 15407

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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729,371 + +0.4
729,491 + +0.8
729,500 - +1.7
729,643 - +0.7
729,702 - +2.3
729,777 + -1.8
729,784 + +0.9
729,803 + +0.2
729,803 + -1.3
729,806 + +0.9
729,809 + +0.8
729,813 + +0.1
729,815 + +0.9
729,947 + +1.4
729,976 - +0.3
730,208 - 15407 mRNA_7039 0.12 -1.1
730,510 + 15407 mRNA_7039 0.27 +0.5
730,797 - 15407 mRNA_7039 0.42 -0.2
730,813 - 15407 mRNA_7039 0.42 +0.6
731,111 - 15407 mRNA_7039 0.57 -0.2
731,267 - 15407 mRNA_7039 0.65 -0.3
731,392 - 15407 mRNA_7039 0.71 +0.4
731,700 - 15407 mRNA_7039 0.86 +0.4
731,709 + 15407 mRNA_7039 0.87 +0.9
731,990 + +0.0
732,136 - +0.9
732,140 - -1.2
732,262 + -0.7
732,570 + +0.3
732,697 - +2.1
732,703 + -0.2
732,714 - -0.3
732,716 - -0.4
732,723 - -0.2
732,725 + -1.1
732,808 + +0.6

Or see this region's nucleotide sequence