Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7051

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15418 and 15419 are separated by 241 nucleotides15419 and 15420 are separated by 393 nucleotides mRNA_7050: 15418 - K08678 UXS1, uxs UDP-glucuronate decarboxylase, at 761,052 to 762,821 15418 mRNA_7051: 15419 - HMMPfam-Translation initiation factor eIF3 subunit-PF08597, at 763,063 to 764,121 15419 mRNA_7052: 15420 - K01624 FBA, fbaA fructose-bisphosphate aldolase, class II, at 764,515 to 766,298 15420

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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762,107 - 15418 mRNA_7050 0.60 +1.8
762,117 + 15418 mRNA_7050 0.60 +1.5
762,237 - 15418 mRNA_7050 0.67 +0.3
762,379 + 15418 mRNA_7050 0.75 -0.6
762,408 - 15418 mRNA_7050 0.77 +1.1
762,411 + 15418 mRNA_7050 0.77 +0.4
762,527 - 15418 mRNA_7050 0.83 -0.1
762,540 - 15418 mRNA_7050 0.84 -1.6
762,557 + 15418 mRNA_7050 0.85 -1.9
762,673 - +1.5
762,820 - -1.9
762,833 - -0.9
762,967 - -0.8
762,976 - +1.1
762,988 - -1.3
764,129 - +0.9
764,165 - -0.0
764,270 + +0.2
764,292 - +0.6
764,306 + -0.2
764,404 - -0.3
764,419 - +0.1
764,427 + -0.3
764,430 + +1.1
764,433 + +0.0
764,434 - +1.6
764,435 - +0.2
764,436 - -0.1
764,442 - +0.1
764,445 + -0.3
764,453 - +0.5
764,453 - +0.5
764,458 - +0.9
764,465 + +0.5
764,465 + -0.0
764,470 + -0.4
764,472 + -1.0

Or see this region's nucleotide sequence