Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7074

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15442 and 15443 are separated by 541 nucleotides mRNA_7074: 15442 - K02218 CSNK1, CKI casein kinase 1, at 821,512 to 823,166 15442 mRNA_7075: 15443 - HMMPfam-Late embryogenesis abundant protein-PF03168,SUPERFAMILY--SSF117070, at 823,708 to 824,890 15443

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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820,652 - +2.4
820,839 - -0.7
821,966 - 15442 mRNA_7074 0.27 -0.2
823,087 - +0.5
823,245 - -2.7
823,255 - -1.5
823,395 + -0.3
823,405 + +0.0
823,417 + +0.6
823,531 + +1.2
823,533 - +1.0
823,540 - +0.4
823,545 - -0.2
823,549 + -1.0
823,550 - +0.3
823,551 - -0.5
823,555 - +0.2
823,559 - +1.0
823,560 - -0.4
823,568 - +1.0
823,568 - -0.6
823,580 - -0.6
823,706 + -0.2
823,738 + -0.4
823,792 - -2.1
823,893 + 15443 mRNA_7075 0.16 +0.2
824,014 - 15443 mRNA_7075 0.26 +0.6

Or see this region's nucleotide sequence