Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7127

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15494 and 15495 are separated by 173 nucleotides15495 and 15496 are separated by 309 nucleotides mRNA_7126: 15494 - K15122 SLC41A solute carrier family 41, at 939,569 to 941,230 15494 mRNA_7127: 15495 - BLAST adenylate cyclase-associated protein [Moesziomyces an..., at 941,404 to 943,862 15495 mRNA_7128: 15496 - K00939 adk, AK adenylate kinase, at 944,172 to 945,488 15496

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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940,741 - 15494 mRNA_7126 0.71 +1.9
940,877 - 15494 mRNA_7126 0.79 +0.4
940,891 - 15494 mRNA_7126 0.80 -0.9
941,014 - 15494 mRNA_7126 0.87 +1.7
941,309 - +1.0
941,327 + -0.9
941,328 + -0.2
941,332 - -0.9
941,460 + +0.1
941,460 + -2.0
941,590 + -0.2
941,595 - -0.8
941,602 - -0.3
941,603 + -0.5
941,612 + +1.2
941,729 - 15495 mRNA_7127 0.13 -1.9
941,736 + 15495 mRNA_7127 0.14 +0.1
941,766 - 15495 mRNA_7127 0.15 -0.8
941,772 + 15495 mRNA_7127 0.15 -0.9
941,775 + 15495 mRNA_7127 0.15 +1.4
942,035 + 15495 mRNA_7127 0.26 +0.2
942,049 - 15495 mRNA_7127 0.26 +0.1
942,105 - 15495 mRNA_7127 0.29 +1.3
942,179 - 15495 mRNA_7127 0.32 -0.3
942,187 - 15495 mRNA_7127 0.32 -1.6
942,660 - 15495 mRNA_7127 0.51 +0.3
942,932 - 15495 mRNA_7127 0.62 -0.2
943,045 - 15495 mRNA_7127 0.67 -0.2
943,518 - 15495 mRNA_7127 0.86 -1.8
944,148 + -0.4

Or see this region's nucleotide sequence