Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7161

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15528 and 15529 are separated by 270 nucleotides mRNA_7160: 15528 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,019,624 to 1,022,322 15528 mRNA_7161: 15529 - Hypothetical Protein, at 1,022,593 to 1,024,140 15529

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,021,969 + 15528 mRNA_7160 0.87 -0.2
1,022,150 - +0.0
1,022,173 - -0.3
1,022,469 + +2.6
1,022,933 - 15529 mRNA_7161 0.22 -0.4
1,023,034 + 15529 mRNA_7161 0.28 -0.1
1,023,056 + 15529 mRNA_7161 0.30 +0.4
1,023,214 + 15529 mRNA_7161 0.40 -1.1
1,023,354 - 15529 mRNA_7161 0.49 +1.0
1,023,785 + 15529 mRNA_7161 0.77 -2.3
1,024,809 - +0.8
1,024,856 + +1.2

Or see this region's nucleotide sequence