Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7165

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15532 and 15533 are separated by 114 nucleotides15533 and 15534 are separated by 152 nucleotides mRNA_7164: 15532 - K13117 DHX35 ATP-dependent RNA helicase DDX35, at 1,028,429 to 1,031,367 15532 mRNA_7165: 15533 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 1,031,482 to 1,033,004 15533 mRNA_7166: 15534 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 1,033,157 to 1,035,237 15534

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,030,556 + 15532 mRNA_7164 0.72 +0.0
1,030,690 + 15532 mRNA_7164 0.77 +2.2
1,030,871 - 15532 mRNA_7164 0.83 +0.3
1,031,019 - 15532 mRNA_7164 0.88 +0.2
1,031,046 - 15532 mRNA_7164 0.89 +0.5
1,031,165 - -1.1
1,031,303 - -1.7
1,031,309 + -1.5
1,031,454 + +0.6
1,031,454 + +0.4
1,033,017 + +1.4
1,033,039 + +1.2
1,033,079 + +0.3
1,033,080 + +1.5
1,033,094 + +0.1
1,033,096 + -0.1
1,033,107 + +1.9
1,033,200 + +0.5
1,033,213 - -0.2
1,033,217 - -0.5
1,033,231 - +1.4
1,033,239 + -0.2
1,033,239 - +2.4
1,033,246 + -0.4
1,033,246 + +0.5
1,033,250 + +0.9
1,033,251 - +1.1
1,033,276 - -0.3
1,033,410 + 15534 mRNA_7166 0.12 -1.3

Or see this region's nucleotide sequence