Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7188

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15555 and 15556 are separated by 309 nucleotides15556 and 15557 are separated by 306 nucleotides mRNA_7187: 15555 - K00799 GST, gst glutathione S-transferase, at 1,078,722 to 1,079,084 15555 mRNA_7188: 15556 - K01870 IARS, ileS isoleucyl-tRNA synthetase, at 1,079,394 to 1,083,450 15556 mRNA_7189: 15557 - K14847 RPF2 ribosome production factor 2, at 1,083,757 to 1,085,072 15557

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,078,403 - -0.5
1,078,541 - +2.0
1,078,560 + -0.2
1,078,564 + +0.3
1,078,852 + 15555 mRNA_7187 0.36 +0.3
1,079,133 - +0.0
1,083,497 - +0.2
1,083,646 - +1.9
1,083,656 + +0.9
1,083,661 - -0.5
1,083,668 - -0.3

Or see this region's nucleotide sequence