Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7209

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15576 and 15577 are separated by 516 nucleotides15577 and 15578 are separated by 850 nucleotides mRNA_7208: 15576 - K03361 CDC4 F-box and WD-40 domain protein CDC4, at 1,123,960 to 1,127,394 15576 mRNA_7209: 15577 - K01408 IDE, ide insulysin, at 1,127,911 to 1,131,746 15577 mRNA_7210: 15578 - K15271 HFM1, MER3 ATP-dependent DNA helicase HFM1/MER3, at 1,132,597 to 1,139,005 15578

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,126,987 + 15576 mRNA_7208 0.88 +1.5
1,127,425 + +0.4
1,127,454 - -0.3
1,127,563 + -1.6
1,127,718 - -0.9
1,127,731 - +0.9
1,127,744 + +0.5
1,127,859 + -0.3
1,127,865 + +0.7
1,127,870 + +0.0
1,128,005 + +0.9
1,128,014 + +0.3
1,128,562 - 15577 mRNA_7209 0.17 +1.0
1,128,759 - 15577 mRNA_7209 0.22 -0.8
1,128,765 - 15577 mRNA_7209 0.22 +1.8
1,129,222 + 15577 mRNA_7209 0.34 +0.5
1,129,356 + 15577 mRNA_7209 0.38 +0.2
1,129,657 + 15577 mRNA_7209 0.46 -0.1
1,130,234 - 15577 mRNA_7209 0.61 -0.5
1,130,372 + 15577 mRNA_7209 0.64 +0.3
1,130,393 - 15577 mRNA_7209 0.65 -0.5
1,131,228 - 15577 mRNA_7209 0.86 +0.2
1,131,385 - +0.1
1,131,521 - -0.1
1,131,534 + +0.4
1,131,642 - -0.1
1,131,662 - +0.0
1,131,688 - +0.8
1,131,792 - +2.1
1,131,857 + -0.5
1,131,947 - +0.8
1,131,953 - -0.4
1,131,959 + -0.6
1,131,965 - -0.1
1,131,965 + -0.5
1,132,125 - -1.2
1,132,133 + -1.1
1,132,136 + +1.0
1,132,140 - +1.1
1,132,143 + +0.2
1,132,150 + +0.9
1,132,152 + +1.0
1,132,161 - -0.1
1,132,170 + -0.4
1,132,180 + -0.1
1,132,180 + +0.2
1,132,189 - +0.5
1,132,209 - +0.4
1,132,274 - -0.5
1,132,308 + +0.4
1,132,350 - +1.3
1,132,350 - +0.8
1,132,357 + +0.1
1,132,550 + -0.2

Or see this region's nucleotide sequence