Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7210

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15577 and 15578 are separated by 850 nucleotides mRNA_7209: 15577 - K01408 IDE, ide insulysin, at 1,127,911 to 1,131,746 15577 mRNA_7210: 15578 - K15271 HFM1, MER3 ATP-dependent DNA helicase HFM1/MER3, at 1,132,597 to 1,139,005 15578

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,131,642 - -0.1
1,131,662 - +0.0
1,131,688 - +0.8
1,131,792 - +2.1
1,131,857 + -0.5
1,131,947 - +0.8
1,131,953 - -0.4
1,131,959 + -0.6
1,131,965 - -0.1
1,131,965 + -0.5
1,132,125 - -1.2
1,132,133 + -1.1
1,132,136 + +1.0
1,132,140 - +1.1
1,132,143 + +0.2
1,132,150 + +0.9
1,132,152 + +1.0
1,132,161 - -0.1
1,132,170 + -0.4
1,132,180 + -0.1
1,132,180 + +0.2
1,132,189 - +0.5
1,132,209 - +0.4
1,132,274 - -0.5
1,132,308 + +0.4
1,132,350 - +1.3
1,132,350 - +0.8
1,132,357 + +0.1
1,132,550 + -0.2
1,133,075 - +0.4
1,133,083 - +0.0
1,133,086 + -0.8
1,133,089 + -0.8
1,133,093 - +0.2
1,133,130 + +0.9
1,133,544 + 15578 mRNA_7210 0.15 +0.7
1,133,663 + 15578 mRNA_7210 0.17 +0.5
1,133,732 - 15578 mRNA_7210 0.18 -1.4
1,133,809 - 15578 mRNA_7210 0.19 +0.7
1,134,731 + 15578 mRNA_7210 0.33 -1.4
1,134,849 - 15578 mRNA_7210 0.35 +0.5
1,135,011 - 15578 mRNA_7210 0.38 -0.5
1,135,413 - 15578 mRNA_7210 0.44 -0.5
1,135,570 - 15578 mRNA_7210 0.46 +0.6
1,135,716 + 15578 mRNA_7210 0.49 +0.8
1,135,868 - 15578 mRNA_7210 0.51 +1.5
1,136,025 - 15578 mRNA_7210 0.53 +0.4
1,136,037 + 15578 mRNA_7210 0.54 +1.2
1,136,129 + 15578 mRNA_7210 0.55 -0.4
1,136,147 + 15578 mRNA_7210 0.55 -0.1
1,136,184 - 15578 mRNA_7210 0.56 +0.7
1,136,187 + 15578 mRNA_7210 0.56 -0.7
1,136,454 + 15578 mRNA_7210 0.60 +1.0
1,136,510 + 15578 mRNA_7210 0.61 -1.9
1,136,726 - 15578 mRNA_7210 0.64 -1.1
1,136,749 - 15578 mRNA_7210 0.65 -1.2
1,136,783 - 15578 mRNA_7210 0.65 +0.2
1,136,885 + 15578 mRNA_7210 0.67 +1.2
1,136,912 + 15578 mRNA_7210 0.67 +0.7
1,137,051 - 15578 mRNA_7210 0.69 -0.2
1,137,057 - 15578 mRNA_7210 0.70 -1.0
1,138,562 + -0.9
1,138,610 + +1.4
1,138,653 - +0.2
1,139,420 - +1.1
1,139,526 - +0.8
1,139,540 + +0.7
1,139,542 - -0.3
1,139,545 - +1.3
1,139,594 - -0.9
1,139,693 - +0.1
1,139,708 - +0.7
1,139,708 + +0.7
1,139,708 - +1.7
1,139,751 + +0.0
1,139,826 - +0.5
1,139,873 + +2.2
1,139,978 - +0.7
1,139,988 - -0.1

Or see this region's nucleotide sequence