Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7213

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15580 and 15581 are separated by 309 nucleotides15581 and 15582 are separated by 137 nucleotides mRNA_7212: 15580 - KOG3764 Vesicular amine transporter, at 1,142,497 to 1,144,513 15580 mRNA_7213: 15581 - K14636 SLC18A3, VACHT MFS transporter, DHA1 family, solute carrier family 18 (vesicular acetylcholine transporter), member 3, at 1,144,823 to 1,146,874 15581 mRNA_7214: 15582 - K17792 TIM54 mitochondrial import inner membrane translocase subunit TIM54, at 1,147,012 to 1,148,920 15582

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,144,008 + 15580 mRNA_7212 0.75 +0.2
1,144,012 - 15580 mRNA_7212 0.75 -0.0
1,144,014 + 15580 mRNA_7212 0.75 +0.2
1,144,135 - 15580 mRNA_7212 0.81 +0.9
1,144,150 + 15580 mRNA_7212 0.82 +0.1
1,144,410 + -0.6
1,144,476 + +0.3
1,144,525 - +0.4
1,144,568 - +0.9
1,144,747 - -1.7
1,144,763 - -0.3
1,145,055 + 15581 mRNA_7213 0.11 +1.3
1,145,206 + 15581 mRNA_7213 0.19 -0.3
1,145,471 - 15581 mRNA_7213 0.32 +1.6
1,145,623 + 15581 mRNA_7213 0.39 +0.6
1,145,624 - 15581 mRNA_7213 0.39 -1.4
1,145,633 - 15581 mRNA_7213 0.39 +0.7
1,145,638 - 15581 mRNA_7213 0.40 -0.8
1,145,935 + 15581 mRNA_7213 0.54 +1.0
1,146,960 + +0.6

Or see this region's nucleotide sequence