Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7252

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15619 and 15620 are separated by 256 nucleotides15620 and 15621 are separated by 743 nucleotides mRNA_7251: 15619 - Hypothetical Protein, at 1,220,664 to 1,222,024 15619 mRNA_7252: 15620 - Hypothetical Protein, at 1,222,281 to 1,223,804 15620 mRNA_7253: 15621 - KOG2497 Predicted methyltransferase, at 1,224,548 to 1,225,738 15621

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,221,338 - 15619 mRNA_7251 0.50 -0.5
1,221,400 + 15619 mRNA_7251 0.54 -0.2
1,221,463 + 15619 mRNA_7251 0.59 +0.3
1,221,581 - 15619 mRNA_7251 0.67 +0.3
1,221,791 + 15619 mRNA_7251 0.83 -0.3
1,221,939 - -0.1
1,222,028 + +0.3
1,222,134 - +0.1
1,222,137 + +0.7
1,222,189 + -0.9
1,222,207 + -0.2
1,222,649 - 15620 mRNA_7252 0.24 -1.5
1,222,691 - 15620 mRNA_7252 0.27 -0.6
1,222,812 + 15620 mRNA_7252 0.35 +0.3
1,222,850 - 15620 mRNA_7252 0.37 -0.9
1,222,945 + 15620 mRNA_7252 0.44 +0.5
1,222,949 - 15620 mRNA_7252 0.44 +2.7
1,223,149 + 15620 mRNA_7252 0.57 -0.8
1,223,410 + 15620 mRNA_7252 0.74 -0.1
1,223,620 - 15620 mRNA_7252 0.88 +0.1
1,223,880 + -1.3
1,223,904 - +0.1
1,223,907 + -1.8
1,224,166 - -0.1
1,224,173 - +0.1
1,224,182 + +0.3
1,224,182 + +0.2
1,224,321 + -0.2
1,224,327 + +1.5
1,224,411 + -2.4
1,224,588 + +0.7
1,224,600 + +0.6
1,224,735 + 15621 mRNA_7253 0.16 +1.3

Or see this region's nucleotide sequence