Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7259

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15626 and 15627 are separated by 197 nucleotides15627 and 15628 are separated by 511 nucleotides mRNA_7258: 15626 - K11378 SAS3 histone acetyltransferase SAS3, at 1,237,198 to 1,241,619 15626 mRNA_7259: 15627 - K15188 CCNT cyclin T, at 1,241,817 to 1,243,103 15627 mRNA_7260: 15628 - K09230 SCAN SCAN domain-containing zinc finger protein, at 1,243,615 to 1,245,304 15628

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,240,865 + 15626 mRNA_7258 0.83 +0.3
1,240,930 + 15626 mRNA_7258 0.84 -2.1
1,241,108 - 15626 mRNA_7258 0.88 +2.5
1,241,273 + +1.2
1,241,498 - +1.3
1,241,530 - -0.2
1,241,698 + -0.8
1,241,702 + +1.0
1,241,822 + +1.5
1,241,825 - -0.8
1,241,870 - +1.2
1,243,165 + -0.2
1,243,182 + +1.3
1,243,301 + +2.0
1,243,413 - -1.7
1,243,441 - -0.1
1,243,697 - +1.5
1,243,733 + +0.1
1,243,929 - 15628 mRNA_7260 0.19 +0.3

Or see this region's nucleotide sequence