Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7327

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15694 and 15695 are separated by 218 nucleotides15695 and 15696 are separated by 297 nucleotides mRNA_7326: 15694 - K01969 E6.4.1.4B 3-methylcrotonyl-CoA carboxylase beta subunit, at 12,485 to 14,861 15694 mRNA_7327: 15695 - KOG2883 NIPSNAP1 protein, at 15,080 to 16,504 15695 mRNA_7328: 15696 - KOG1339 Aspartyl protease, at 16,802 to 18,584 15696

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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14,287 - 15694 mRNA_7326 0.76 +0.2
14,307 + 15694 mRNA_7326 0.77 -0.1
14,508 + 15694 mRNA_7326 0.85 +2.5
14,779 + +0.1
14,794 - +0.8
14,908 + +1.4
14,911 - +1.0
14,911 - +0.2
14,920 + +0.7
14,945 - +0.6
14,945 - -0.4
14,958 + +1.0
14,972 + +1.0
14,989 + +0.1
14,993 + +0.9
15,064 - +0.7
15,090 - -1.2
15,104 + -0.9
15,370 - 15695 mRNA_7327 0.20 +0.5
15,373 + 15695 mRNA_7327 0.21 -0.6
15,541 + 15695 mRNA_7327 0.32 +0.9
15,545 + 15695 mRNA_7327 0.33 +2.1
15,548 + 15695 mRNA_7327 0.33 +0.2
15,721 + 15695 mRNA_7327 0.45 +0.8
15,781 + 15695 mRNA_7327 0.49 +2.0
15,781 - 15695 mRNA_7327 0.49 +1.2
16,260 - 15695 mRNA_7327 0.83 +0.2
16,270 - 15695 mRNA_7327 0.84 +0.3
16,314 + 15695 mRNA_7327 0.87 -2.2
16,588 + +0.1
16,598 + +0.0
16,769 - +0.6
16,797 + +0.4
17,098 - 15696 mRNA_7328 0.17 -0.4
17,165 + 15696 mRNA_7328 0.20 +0.3
17,318 + 15696 mRNA_7328 0.29 -0.3

Or see this region's nucleotide sequence