Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7345

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15712 and 15713 are separated by 516 nucleotides mRNA_7344: 15712 - K01697 E4.2.1.22, CBS cystathionine beta-synthase, at 46,801 to 48,602 15712 mRNA_7345: 15713 - K00264 GLT1 glutamate synthase (NADPH/NADH), at 49,119 to 56,418 15713

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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48,306 + 15712 mRNA_7344 0.84 +0.4
48,340 - 15712 mRNA_7344 0.85 -0.9
48,514 - +0.1
48,656 - +2.1
48,657 - +2.8
48,658 - -1.5
48,659 + -0.0
48,665 - -0.9
48,670 + -0.4
48,673 + +0.1
48,682 + -1.4
48,686 - -0.4
48,691 + -0.6
48,695 + -0.5
48,785 - -0.8
48,809 - +0.4
48,810 - +0.8
48,812 - -1.7
48,834 - +0.4
48,857 - +0.1
48,869 - +1.0
48,871 - +0.5
48,877 - -0.0
48,891 + +0.8
48,892 - -0.7
48,948 - -1.1
49,009 - +0.3
49,086 + +0.7
49,113 - -0.2
49,193 + -0.2
49,449 - -0.0
49,679 + +0.3
49,704 + +0.7
49,812 + -0.1
50,053 - 15713 mRNA_7345 0.13 +0.6
50,127 - 15713 mRNA_7345 0.14 +0.3
50,301 - 15713 mRNA_7345 0.16 -0.1
50,312 + 15713 mRNA_7345 0.16 +0.8
50,390 - 15713 mRNA_7345 0.17 +1.1
50,843 + 15713 mRNA_7345 0.24 -0.3
50,894 - 15713 mRNA_7345 0.24 -0.7
50,915 + 15713 mRNA_7345 0.25 +0.1
50,941 - 15713 mRNA_7345 0.25 +2.0
51,223 + 15713 mRNA_7345 0.29 +0.0
51,441 - 15713 mRNA_7345 0.32 +0.4
51,801 - 15713 mRNA_7345 0.37 -0.9
51,849 + 15713 mRNA_7345 0.37 +0.4
51,884 + 15713 mRNA_7345 0.38 -0.9
51,912 + 15713 mRNA_7345 0.38 -2.3
52,138 - 15713 mRNA_7345 0.41 +1.1
52,148 + 15713 mRNA_7345 0.41 +1.2
52,148 + 15713 mRNA_7345 0.41 -0.5
52,187 - 15713 mRNA_7345 0.42 +0.3
52,265 + 15713 mRNA_7345 0.43 +1.1
52,705 + 15713 mRNA_7345 0.49 -0.1
52,726 - 15713 mRNA_7345 0.49 +0.5
52,726 - 15713 mRNA_7345 0.49 +0.2
52,726 - 15713 mRNA_7345 0.49 +1.8
52,777 + 15713 mRNA_7345 0.50 +0.0
52,804 + 15713 mRNA_7345 0.50 +0.1
52,904 - 15713 mRNA_7345 0.52 -0.9
53,045 - 15713 mRNA_7345 0.54 -0.3
53,083 - 15713 mRNA_7345 0.54 +0.1
53,148 - 15713 mRNA_7345 0.55 +0.3
54,129 - 15713 mRNA_7345 0.69 -0.2
54,246 - 15713 mRNA_7345 0.70 +0.1
54,429 - 15713 mRNA_7345 0.73 -0.6
54,448 + 15713 mRNA_7345 0.73 +0.6
54,574 + 15713 mRNA_7345 0.75 -0.3
54,789 + 15713 mRNA_7345 0.78 +2.6
54,825 + 15713 mRNA_7345 0.78 -0.2
55,326 + 15713 mRNA_7345 0.85 +0.6
55,636 + 15713 mRNA_7345 0.89 -0.2
55,636 + 15713 mRNA_7345 0.89 +0.3
55,839 - -1.7
55,864 - -0.0
56,023 - +0.1
56,392 - -1.0
56,461 - +1.6
56,600 - -0.6
56,632 + -0.0
56,640 + +0.3
56,648 + +0.7
56,651 + -2.0
56,793 - +0.7
56,794 + +0.7
56,803 + +0.7
56,811 + -0.2
56,817 + +0.9
56,818 - -1.7
56,832 + -0.8
56,845 + -0.4
56,913 - -0.4
56,918 - +0.7
56,938 - +0.8
56,951 + -1.9
56,964 - -0.1
56,976 + -1.7
56,977 + -1.8
56,981 + +1.2
56,985 + -1.5
56,986 + +0.1
56,990 - +0.1
56,991 - -0.1
56,997 + -0.5
57,052 - +0.4
57,055 + -0.5
57,065 + +0.5
57,074 + +0.3
57,079 - -0.4
57,091 - -0.1
57,092 + -0.6
57,096 - -0.1
57,098 - -0.0
57,101 + +0.2
57,101 + +0.7
57,101 + +0.0
57,110 - -0.4
57,120 - -0.3
57,195 + -2.4
57,206 - +0.2
57,219 + -1.0
57,243 + +1.0
57,254 + -0.3
57,260 - +1.2
57,266 + -1.5
57,267 - -0.9
57,268 + +1.3
57,272 - -0.0
57,291 + +0.5
57,347 + -0.6

Or see this region's nucleotide sequence