Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7354

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15721 and 15722 are separated by 234 nucleotides15722 and 15723 are separated by 305 nucleotides mRNA_7353: 15721 - K00927 PGK, pgk phosphoglycerate kinase, at 75,097 to 76,913 15721 mRNA_7354: 15722 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 77,148 to 79,118 15722 mRNA_7355: 15723 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 79,424 to 80,346 15723

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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77,107 + -1.0
77,158 - +0.3
77,186 + +0.9
77,197 - +0.2
77,230 - +0.3
77,579 - 15722 mRNA_7354 0.22 -0.3
78,189 - 15722 mRNA_7354 0.53 +1.4
78,743 + 15722 mRNA_7354 0.81 +0.4
78,864 - 15722 mRNA_7354 0.87 +0.0
78,885 - 15722 mRNA_7354 0.88 -0.6
79,196 + +0.1
79,204 - +0.5
79,210 - -0.8
79,346 + +1.0
79,350 + +0.9
79,377 - -0.1
79,381 + +1.1
79,396 + +0.4
79,530 - 15723 mRNA_7355 0.11 +0.3
79,545 - 15723 mRNA_7355 0.13 +0.5
80,002 - 15723 mRNA_7355 0.63 +0.1

Or see this region's nucleotide sequence