Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7362

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15729 and 15730 are separated by 345 nucleotides15730 and 15731 are separated by 94 nucleotides mRNA_7361: 15729 - K14685 SLC40A1, FPN1 solute carrier family 40 (iron-regulated transporter), member 1, at 91,590 to 93,600 15729 mRNA_7362: 15730 - K13035 NIT4 beta-cyano-L-alanine hydratase/nitrilase, at 93,946 to 95,192 15730 mRNA_7363: 15731 - SUPERFAMILY--SSF48371, at 95,287 to 98,403 15731

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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93,378 - 15729 mRNA_7361 0.89 +1.0
93,385 + 15729 mRNA_7361 0.89 -0.6
93,393 + 15729 mRNA_7361 0.90 -1.3
93,520 - -1.3
93,554 + -0.1
93,687 + -1.9
93,742 - +0.2
93,790 + -0.1
93,813 - +0.3
93,841 + -2.1
93,841 - +0.2
93,859 + -0.1
93,860 + +0.8
93,863 + -1.8
94,066 - +0.1
94,449 + 15730 mRNA_7362 0.40 -0.4
94,582 + 15730 mRNA_7362 0.51 +0.4
94,591 + 15730 mRNA_7362 0.52 +2.4
94,675 - 15730 mRNA_7362 0.58 +2.4
94,717 - 15730 mRNA_7362 0.62 +1.1
94,809 + 15730 mRNA_7362 0.69 -0.4
94,839 - 15730 mRNA_7362 0.72 +1.0
94,906 - 15730 mRNA_7362 0.77 +0.3
95,183 + -0.2

Or see this region's nucleotide sequence