Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7405

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15772 and 15773 are separated by 211 nucleotides15773 and 15774 are separated by 745 nucleotides mRNA_7404: 15772 - HMMPfam-Protein of unknown function (DUF2470)-PF10615, at 197,596 to 198,665 15772 mRNA_7405: 15773 - KOG1589 Uncharacterized conserved protein, at 198,877 to 199,727 15773 mRNA_7406: 15774 - Hypothetical Protein, at 200,473 to 201,495 15774

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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197,996 + 15772 mRNA_7404 0.37 -0.2
198,180 - 15772 mRNA_7404 0.55 -1.8
198,280 + 15772 mRNA_7404 0.64 -0.6
198,421 - 15772 mRNA_7404 0.77 -0.0
198,450 + 15772 mRNA_7404 0.80 -1.0
198,577 - -0.8
198,579 + -0.0
198,596 - +0.2
198,604 - -0.3
198,721 - -0.0
198,759 + -0.2
198,760 - -0.4
199,041 + 15773 mRNA_7405 0.19 +0.9
199,765 + -0.3
199,905 + +1.1
199,906 + -0.1
200,050 + +0.7
200,086 + +0.3
200,098 - +0.8
200,102 + -0.5
200,182 + +0.3
200,188 + +1.1
200,195 + -1.1
200,205 + -0.9
200,234 - +0.4
200,262 + -0.7
200,284 + +1.0
200,296 + -0.6
200,327 - -1.9
200,330 + +1.4
200,396 - +2.0
200,413 - -0.7
200,413 - -0.6
200,426 + -0.8
200,429 - -0.5
200,459 + -0.2
200,619 - 15774 mRNA_7406 0.14 -0.3
200,703 - 15774 mRNA_7406 0.22 -1.4

Or see this region's nucleotide sequence