Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7437

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15804 and 15805 are separated by 399 nucleotides15805 and 15806 are separated by 253 nucleotides mRNA_7436: 15804 - Hypothetical Protein, at 274,972 to 276,124 15804 mRNA_7437: 15805 - K01756 purB, ADSL adenylosuccinate lyase, at 276,524 to 278,511 15805 mRNA_7438: 15806 - K01455 E3.5.1.49 formamidase, at 278,765 to 280,421 15806

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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275,777 + 15804 mRNA_7436 0.70 -0.5
275,832 - 15804 mRNA_7436 0.75 +0.7
276,243 + +0.1
276,483 - +0.1
278,555 + +0.7
278,559 + -0.8
278,560 - +0.3
278,566 + +0.5
278,570 + -0.3
278,582 + +0.4
278,583 - -0.8
278,583 - +0.8
278,584 + +2.5
278,588 + -1.1
278,595 - +2.4
278,723 - -0.6
278,730 - -0.4
278,741 - -0.3
278,748 + -0.1
279,189 + 15806 mRNA_7438 0.26 +1.0

Or see this region's nucleotide sequence