Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7483

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15850 and 15851 are separated by 328 nucleotides mRNA_7482: 15850 - Hypothetical Protein, at 389,619 to 390,464 15850 mRNA_7483: 15851 - HMMPfam-Stress-induced bacterial acidophilic repeat motif-PF10685, at 390,793 to 391,582 15851

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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389,993 + 15850 mRNA_7482 0.44 +0.5
390,137 + 15850 mRNA_7482 0.61 +1.1
390,289 + 15850 mRNA_7482 0.79 -0.3
390,290 - 15850 mRNA_7482 0.79 -0.7
390,407 + -0.4
390,438 - -0.6
390,575 - +1.1
390,586 + +0.4
390,588 + -0.1
391,027 - 15851 mRNA_7483 0.30 +1.1
391,600 + -3.3
391,600 + -4.1
391,736 + -1.5
391,741 + +1.1
391,756 - +0.2
391,761 - -0.1
391,768 + -0.4
391,789 - -3.6
391,865 - -0.8
392,052 + +0.6
392,080 - -3.0
392,182 - +1.3
392,193 - +0.7
392,209 - +0.5
392,356 + +1.1

Or see this region's nucleotide sequence