Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7509

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15876 and 15877 are separated by 239 nucleotides15877 and 15878 are separated by 151 nucleotides mRNA_7508: 15876 - SUPERFAMILY--SSF52047, at 457,973 to 459,421 15876 mRNA_7509: 15877 - K11548 NUF2, CDCA1 kinetochore protein Nuf2, at 459,661 to 461,495 15877 mRNA_7510: 15878 - K11644 SIN3A paired amphipathic helix protein Sin3a, at 461,647 to 466,734 15878

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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458,785 - 15876 mRNA_7508 0.56 -1.4
458,810 - 15876 mRNA_7508 0.58 -0.5
458,810 + 15876 mRNA_7508 0.58 +1.0
459,093 + 15876 mRNA_7508 0.77 -0.5
459,420 + -0.6
461,544 - -1.3
461,675 - +0.9
461,844 + -1.2
461,859 + +1.9

Or see this region's nucleotide sequence