Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7534

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15901 and 15902 are separated by 323 nucleotides15902 and 15903 are separated by 141 nucleotides mRNA_7533: 15901 - K10885 XRCC5, KU80, G22P2 ATP-dependent DNA helicase 2 subunit 2, at 507,910 to 511,338 15901 mRNA_7534: 15902 - K07304 msrA peptide-methionine (S)-S-oxide reductase, at 511,662 to 512,740 15902 mRNA_7535: 15903 - HMMPfam-Complex1_LYR-like-PF13232, at 512,882 to 513,517 15903

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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510,822 - 15901 mRNA_7533 0.85 +1.0
510,977 - 15901 mRNA_7533 0.89 +1.2
511,246 - +1.5
511,260 - +0.5
511,396 + +0.2
511,415 + -1.7
511,425 + -0.9
511,550 - +0.1
511,566 + +1.4
511,708 + +0.1
511,845 - 15902 mRNA_7534 0.17 -3.3
511,849 + 15902 mRNA_7534 0.17 -1.0
511,850 - 15902 mRNA_7534 0.17 +1.2
512,001 + 15902 mRNA_7534 0.31 -0.2
512,013 - 15902 mRNA_7534 0.33 -1.2
512,013 + 15902 mRNA_7534 0.33 +0.3
512,128 - 15902 mRNA_7534 0.43 +0.9
512,255 + 15902 mRNA_7534 0.55 +1.0
512,295 - 15902 mRNA_7534 0.59 -0.0
512,433 + 15902 mRNA_7534 0.71 -0.1
512,697 - +0.3
512,720 - -0.8
512,721 + +0.4
512,735 + -0.4
512,738 - -2.0
512,739 + +0.6
513,583 - +0.1
513,597 + -0.9
513,599 - -0.1
513,728 + -1.6

Or see this region's nucleotide sequence