Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7539

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15907 and 15908 are separated by 212 nucleotides mRNA_7539: 15907 - K07300 chaA, CAX Ca2+-H+ antiporter, at 519,946 to 522,544 15907 mRNA_7540: 15908 - K01012 bioB biotin synthase, at 522,757 to 524,526 15908

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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518,947 + -0.2
518,959 - +0.2
518,977 + +2.1
519,067 + +0.6
519,115 + +1.0
519,121 - -0.0
519,125 + -0.1
519,142 + +0.3
519,146 - -0.6
519,157 + -0.8
519,162 + +0.1
519,189 - -0.1
519,199 - +0.2
519,226 - -0.6
519,244 - +0.3
519,265 + +0.2
519,373 - -1.8
519,386 - -0.5
519,515 - +0.4
519,530 - +0.0
519,542 + -0.1
519,550 - -5.3
519,552 - +0.3
519,554 + -0.7
519,692 - +0.1
520,117 - +0.1
520,573 + 15907 mRNA_7539 0.24 +1.4
521,159 - 15907 mRNA_7539 0.47 -1.4
521,404 - 15907 mRNA_7539 0.56 +0.4
521,446 + 15907 mRNA_7539 0.58 -0.0
521,453 + 15907 mRNA_7539 0.58 -0.6
521,827 - 15907 mRNA_7539 0.72 +0.8
522,156 + 15907 mRNA_7539 0.85 +0.3
522,287 + -0.6
522,303 - +1.1
522,387 - +0.2
522,402 - -1.3
522,451 - +0.2
522,484 + +1.1
522,623 - -0.4
522,625 + -0.2
522,627 + +0.1
522,628 + +0.7
522,630 - -0.1
522,633 + +1.9
522,646 + +1.0
522,653 - -1.6
522,659 + -0.4
522,671 + +0.0
522,682 - +0.1
522,786 - -0.4
522,811 - -0.1

Or see this region's nucleotide sequence