Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7606

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15973 and 15974 are separated by 417 nucleotides15974 and 15975 are separated by 244 nucleotides mRNA_7605: 15973 - K03941 NDUFS8 NADH dehydrogenase (ubiquinone) Fe-S protein 8, at 662,538 to 663,838 15973 mRNA_7606: 15974 - Hypothetical Protein, at 664,256 to 665,164 15974 mRNA_7607: 15975 - BLAST UPF0428 CXorf56-like protein, putative [Rhizoctonia s..., at 665,409 to 666,288 15975

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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663,911 - -0.9
663,915 + +2.1
664,042 - +0.1
664,061 + -0.6
664,073 - +2.1
664,351 + 15974 mRNA_7606 0.10 -0.7
664,363 - 15974 mRNA_7606 0.12 -0.4
664,494 + 15974 mRNA_7606 0.26 +0.9
664,497 + 15974 mRNA_7606 0.27 +0.0
664,795 - 15974 mRNA_7606 0.59 -0.3
664,926 + 15974 mRNA_7606 0.74 +0.5
665,086 - +0.4
665,222 - +0.1
665,362 - +2.1
665,362 - -0.3
665,375 + -1.1
665,396 - +1.4
665,511 + 15975 mRNA_7607 0.12 +0.5
665,519 - 15975 mRNA_7607 0.12 -0.2
665,541 - 15975 mRNA_7607 0.15 -1.2
665,546 + 15975 mRNA_7607 0.16 +0.7
665,668 + 15975 mRNA_7607 0.29 -0.5
665,673 - 15975 mRNA_7607 0.30 -1.6
665,679 + 15975 mRNA_7607 0.31 +1.6
665,685 + 15975 mRNA_7607 0.31 +0.1
665,834 - 15975 mRNA_7607 0.48 +0.5

Or see this region's nucleotide sequence