Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7618

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15986 and 15987 are separated by 186 nucleotides mRNA_7618: 15986 - K14549 UTP15 U3 small nucleolar RNA-associated protein 15, at 694,417 to 696,381 15986 mRNA_7619: 15987 - Interpro NADH-ubiquinone oxidoreductase MWFE subunit 0, at 696,568 to 697,325 15987

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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693,419 - +0.1
693,424 + -1.5
693,436 + -0.4
693,437 + -1.3
693,445 + +1.1
693,453 + -0.1
693,457 + +1.3
693,461 - -1.0
693,465 - -0.2
693,465 - +0.5
693,466 - -1.8
693,466 - -1.4
693,467 + -0.3
693,468 - +0.4
693,473 + -0.2
693,478 - +0.3
693,479 + -0.9
693,492 + +1.2
693,499 - -1.4
693,499 - +0.0
693,500 + +0.3
693,532 + -0.3
693,541 + +0.5
693,613 + -0.1
693,655 - -0.4
693,659 + -1.0
693,662 + -0.8
693,663 + -0.3
693,665 - +0.3
693,669 - -1.7
693,674 - -1.4
693,678 + +0.3
693,682 + +0.5
693,693 - +0.3
693,705 + -1.0
693,717 - +1.0
693,736 + +0.0
693,756 - -0.3
693,777 - -1.1
693,781 + +0.9
693,785 + -1.0
693,801 + -0.5
693,833 - +1.5
693,904 + +0.5
693,940 - +0.2
693,949 + +0.6
693,952 + +0.5
693,956 + -0.2
693,957 + -0.2
693,977 + +1.8
694,004 - +0.2
694,103 + +1.0
694,119 - -0.0
694,120 - +0.1
694,240 - -0.2
694,241 + +1.6
694,242 + -0.1
694,254 - +1.4
694,262 + +1.0
694,266 - +0.4
694,268 - +0.5
694,268 + -0.1
694,278 - +0.7
694,278 - +1.1
694,289 - +1.6

Or see this region's nucleotide sequence