Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7647

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16014 and 16015 are separated by 66 nucleotides16015 and 16016 are separated by 647 nucleotides mRNA_7646: 16014 - Hypothetical Protein, at 757,554 to 759,024 16014 mRNA_7647: 16015 - KOG2741 Dimeric dihydrodiol dehydrogenase, at 759,091 to 760,573 16015 mRNA_7648: 16016 - K01705 LYS4 homoaconitate hydratase, at 761,221 to 763,593 16016

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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758,380 + 16014 mRNA_7646 0.56 -0.2
758,414 + 16014 mRNA_7646 0.58 +1.2
758,432 + 16014 mRNA_7646 0.60 -0.2
758,541 - 16014 mRNA_7646 0.67 -1.6
758,593 + 16014 mRNA_7646 0.71 +0.5
758,598 + 16014 mRNA_7646 0.71 -2.6
758,708 + 16014 mRNA_7646 0.78 +0.0
758,848 + 16014 mRNA_7646 0.88 +1.0
758,972 - -0.3
759,154 - +0.1
759,310 + 16015 mRNA_7647 0.15 -0.3
759,447 + 16015 mRNA_7647 0.24 -0.8
759,730 - 16015 mRNA_7647 0.43 +0.7
759,920 - 16015 mRNA_7647 0.56 -0.4
760,731 - -0.5
760,743 + -0.0
760,765 + -0.2
760,769 - +0.4
761,026 - +0.5
761,039 + +1.9
761,055 + -0.3
761,188 - +0.1
761,188 - -0.5
761,480 - 16016 mRNA_7648 0.11 -2.3
761,489 + 16016 mRNA_7648 0.11 -3.0

Or see this region's nucleotide sequence