Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7670

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16037 and 16038 are separated by 989 nucleotides16038 and 16039 are separated by 207 nucleotides mRNA_7669: 16037 - K06134 COQ7 ubiquinone biosynthesis monooxygenase Coq7, at 804,718 to 805,657 16037 mRNA_7670: 16038 - Hypothetical Protein, at 806,647 to 807,421 16038 mRNA_7671: 16039 - SUPERFAMILY--SSF56112, at 807,629 to 808,363 16039

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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805,727 + -1.3
805,852 - +1.6
805,861 + -0.4
805,902 + +1.0
806,192 + -1.1
806,476 - +0.2
806,576 - -0.3
806,888 + 16038 mRNA_7670 0.31 +0.5
807,134 - 16038 mRNA_7670 0.63 -2.2
807,248 + 16038 mRNA_7670 0.78 -1.9
807,435 - -0.1
807,458 + -0.6
807,643 - +0.7
807,645 + +0.6
808,142 - 16039 mRNA_7671 0.70 +0.5

Or see this region's nucleotide sequence